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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192117154_192119008_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192117154 - 192119008
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
CATTGCATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTTCTTCATT
Flanking Amino Acid:
EDGTKASGATAMVLLKRSRT
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74
0.54
1
65.8
39.5
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
68.7
0.67
1.7
85.57
35

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029894
192115036 - 192191406
76371
ENSAPLT00000006797
192115036 - 192166193
51158