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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192119096_192120612_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192119096 - 192120612
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CTAATATTGACT
Flanking Amino Acid:
PVTANFKGVSEQAGLYISEA
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
52
0.14
1.7
69.37
41.4

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029894
192115036 - 192191406
76371
ENSAPLT00000006797
192115036 - 192166193
51158