About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192126668_192127725_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
192126668 - 192127725

Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAGTGTAA

5'SS Class:
major

3'SS Sequence:
CTTTCCCATGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCCCAT

U12 Branch Point Sequence:
CCCTCCCCATCT

Flanking Amino Acid:
IQEWISSNLGDGDVHGLPLE

Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.6
0.49
1.1
64.7
37.7

Major BPS
72.3
0.55
1.2
80.7
33.2

Major PPT
79.5
0.66
0.8
74.1
29.9

Minor 5ss
34.7
-1.7
3.5
46.2
49

Minor BPS
44.4
-0.3
2.1
60.43
48.7

Associated Gene:

Gene:
SERPINE3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

192115036 - 192191406
76371

192115036 - 192166193
51158