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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192131627_192162262_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192131627 - 192162262
Intron Length:
30636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTACTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTCTCTAAAT
Flanking Amino Acid:
DHDGNRILLQVWLSGGEHSQ
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.61
0.9
71
38.4
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
69.7
0.7
1.7
90.15
33.3

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029894
192115036 - 192191406
76371
ENSAPLT00000006797
192115036 - 192166193
51158