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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192152183_192162262_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192152183 - 192162262
Intron Length:
10080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTAATATGATCT
Flanking Amino Acid:
DHDGNRILLQQARSWCRKSA
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.6
0.64
0.8
72.8
32
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
45.9
-0.2
1.9
67.79
42.3

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030009
192151379 - 192187384
36006
ENSAPLT00000018799
192151379 - 192191406
40028
ENSAPLT00000006766
192151379 - 192191432
40054