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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192162416_192162505_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
192162416 - 192162505
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
AAAACTTCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
KLYELILKRPGQMPVPTESA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
61.8
44.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
51
0.02
1.1
49
38.4
Minor 5ss
40.1
-1.1
2.8
50.1
46.1
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018799
192151379 - 192191406
40028
ENSAPLT00000006766
192151379 - 192191432
40054