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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192163003_192182086_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192163003 - 192182086
Intron Length:
19084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTACGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTTTTTACG
Flanking Amino Acid:
SEYSRMSSTSSELSVEDIQD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75
0.56
0.9
65.8
40.8
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
59.1
0.14
1.7
68.28
39.2

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018799
192151379 - 192191406
40028
ENSAPLT00000030009
192151379 - 192187384
36006
ENSAPLT00000029894
192115036 - 192191406
76371