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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192163003_192191323_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192163003 - 192191323
Intron Length:
28321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTACGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTTTTTACG
Flanking Amino Acid:
TAGTREPRREGELSVEDIQD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
45.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75
0.56
0.9
65.8
40.8
Minor 5ss
29.9
-2.3
3.2
29.1
43.5
Minor BPS
59.1
0.14
1.7
68.28
39.2

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006766
192151379 - 192191432
40054