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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192182119_192186470_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192182119 - 192186470
Intron Length:
4352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTAACTGAAGT
Flanking Amino Acid:
VMSPMFSLKSRSEYSRMSST
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
54.2
0.21
2
79.07
42.4

Associated Gene:

Gene:
SERPINE3
Ensembl Gene ID:
ENSAPLG00000006531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030009
192151379 - 192187384
36006