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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192202807_192203144_F

Intron Information:

Intron Rank:
143871
Intron Class:
major
Intron Phase:
Intron Coordinates:
192202807 - 192203144
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATGAC
5'SS Class:
major
3'SS Sequence:
TATCTCCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCCTTTCTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.8
33.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
76.4
0.6
0.9
70.7
34.7
Minor 5ss
38.4
-1.3
3.2
51.5
45.7
Minor BPS
48.2
-0
1.9
67.24
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018330
192202472 - 192203954
1483