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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192213571_192221757_F

Intron Information:

Intron Rank:
123500
Intron Class:
major
Intron Phase:
Intron Coordinates:
192213571 - 192221757
Intron Length:
8187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACATAG
5'SS Class:
major
3'SS Sequence:
TTATTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
61.3
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
43
-0.8
3
52.7
45.5
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039142
192213373 - 192223420
10048