Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192214974_192221757_F

Intron Information:

Intron Rank:

123502

Intron Class:

major

Intron Phase:

Intron Coordinates:

192214974 - 192221757

Intron Length:

6784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

68.4

36.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.9

0.76

0.9

81.2

Minor 5ss

35.6

-1.6

3.5

47.4

48.2

Minor BPS

80.5

0.95

83.59

30.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016596

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039884

192214771 - 192223420

8650