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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192218416_192221757_F

Intron Information:

Intron Rank:
123498
Intron Class:
major
Intron Phase:
Intron Coordinates:
192218416 - 192221757
Intron Length:
3342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022022
192214771 - 192223420
8650