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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192249769_192261846_F

Intron Information:

Intron Rank:
129463
Intron Class:
major
Intron Phase:
Intron Coordinates:
192249769 - 192261846
Intron Length:
12078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.9
0.58
0.9
66.7
43.3
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
68.4
0.66
1.4
80.25
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019639
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037593
192237616 - 192262666
25051