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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192269739_192280531_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192269739 - 192280531
Intron Length:
10793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TAATGCTTACGC
Flanking Amino Acid:
TGPSPEPPLKMPAQRHPKKK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
89.3
0.88
0.6
88.7
20.6
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
46.7
-0.2
2.3
60.06
44.9

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021885
192269596 - 192311490
41895