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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192275819_192277022_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192275819 - 192277022
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTAACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ATCACTCTAACA
Flanking Amino Acid:
QMLCRNANILLKGNYQMSLW
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
75.1
0.56
0.9
70.6
39.4
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
56.4
0.2
1.7
67.18
39.1

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022964
192273644 - 192303049
29406