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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192281334_192284282_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
192281334 - 192284282
Intron Length:
2949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCCTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCCTTTTCATT
Flanking Amino Acid:
SGKQITDAEEDYVRYAHGLI
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
57.1
0.16
1.7
65.3
36.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
48.4
-0
1.7
63.63
42

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000038210
192276735 - 192303049
26315
ENSAPLT00000022964
192273644 - 192303049
29406
ENSAPLT00000021885
192269596 - 192311490
41895
ENSAPLT00000046584
192275842 - 192311490
35649