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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192284389_192285550_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192284389 - 192285550
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCACGT
5'SS Class:
major
3'SS Sequence:
TGGTTTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTGATATAGACA
Flanking Amino Acid:
EKTLKWLKKKVNQTVKALKS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
59
45.6
Major BPS
71.2
0.53
1
61
37.5
Major PPT
75.4
0.57
0.9
69.9
36.8
Minor 5ss
45.3
-0.5
3
66.1
44.8
Minor BPS
42.9
-0.5
1.9
51.14
40.7

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021885
192269596 - 192311490
41895
ENSAPLT00000046584
192275842 - 192311490
35649
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000038210
192276735 - 192303049
26315
ENSAPLT00000022964
192273644 - 192303049
29406