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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192285616_192290768_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192285616 - 192290768
Intron Length:
5153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAGA
5'SS Class:
major
3'SS Sequence:
TGGTTTATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
CTTGGTTTATCT
Flanking Amino Acid:
QSIHHVTEEKEIGSQKFHKY
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
70.2
35.7
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
76.2
0.59
0.9
74
40.4
Minor 5ss
26.7
-2.7
2.8
31.6
42.2
Minor BPS
48.7
-0
2.1
70.73
46.8

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000038210
192276735 - 192303049
26315
ENSAPLT00000022964
192273644 - 192303049
29406
ENSAPLT00000021885
192269596 - 192311490
41895
ENSAPLT00000046584
192275842 - 192311490
35649