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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192290890_192293427_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192290890 - 192293427
Intron Length:
2538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
GATGTGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTCCTTTGATG
Flanking Amino Acid:
LYYLIKADKEQQGKFQPLDQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
80
0.75
1
78.6
31
Major PPT
74.2
0.55
1
69.5
45.7
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
62.9
0.26
1.3
64.52
37.6

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000038210
192276735 - 192303049
26315
ENSAPLT00000022964
192273644 - 192303049
29406
ENSAPLT00000021885
192269596 - 192311490
41895
ENSAPLT00000046584
192275842 - 192311490
35649