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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192293505_192296315_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192293505 - 192296315
Intron Length:
2811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTGTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGGTACTGAATT
Flanking Amino Acid:
SWFIGETVQQDGRLLFVTPM
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
68.4
0.41
0.9
66.3
39.9
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
59.6
0.38
1.7
74.94
41.6

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000038210
192276735 - 192303049
26315
ENSAPLT00000022964
192273644 - 192303049
29406
ENSAPLT00000021885
192269596 - 192311490
41895
ENSAPLT00000046584
192275842 - 192311490
35649