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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192299438_192302883_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192299438 - 192302883
Intron Length:
3446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGCTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAGTTTCTAACT
Flanking Amino Acid:
QLLDVSPTFLEAATDPPKTP
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
74.8
38.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
42.9
-0.8
3.4
63.6
48.1
Minor BPS
57
0.3
1.6
71.72
39.2

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022964
192273644 - 192303049
29406
ENSAPLT00000009348
192273099 - 192303049
29951
ENSAPLT00000038210
192276735 - 192303049
26315