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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192299438_192311423_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192299438 - 192311423
Intron Length:
11986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCG
5'SS Class:
major
3'SS Sequence:
TTTCTCCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AAGTTTCTAACT
Flanking Amino Acid:
HPAQWVLVAPEAATDPPKTP
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
57.2
47.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
43.7
-0.7
2.9
57.5
46.7
Minor BPS
57
0.3
1.6
71.72
39.2

Associated Gene:

Gene:
RNASEH2B
Ensembl Gene ID:
ENSAPLG00000008955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046584
192275842 - 192311490
35649
ENSAPLT00000044104
192268757 - 192311490
42734
ENSAPLT00000021885
192269596 - 192311490
41895