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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192311614_192314903_F

Intron Information:

Intron Rank:
128460
Intron Class:
major
Intron Phase:
Intron Coordinates:
192311614 - 192314903
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCCTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
62.8
42
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.2
0.63
0.8
78.8
28.5
Minor 5ss
32.3
-2
3.4
43
44.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037238
192311511 - 192315918
4408