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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192315043_192315797_F

Intron Information:

Intron Rank:
128461
Intron Class:
major
Intron Phase:
Intron Coordinates:
192315043 - 192315797
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGATCATTTAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90.3
0.91
0.6
84.6
30.3
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
48.6
-0
2.2
71.15
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019180
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037238
192311511 - 192315918
4408