About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192343174_192350391_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192343174 - 192350391
Intron Length:
7218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTTTCACT
Flanking Amino Acid:
QQHPFPLHPKDSIEFRNICS
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
66.1
0.59
1.7
83.9
37.2

Associated Gene:

Gene:
DLEU7
Ensembl Gene ID:
ENSAPLG00000008954
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009307
192342691 - 192350598
7908