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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192500205_192504954_R

Intron Information:

Intron Rank:
150541
Intron Class:
major
Intron Phase:
Intron Coordinates:
192500205 - 192504954
Intron Length:
4750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GACACTTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
70.5
0.46
0.9
66.3
34.8
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
46
-0.3
1.7
50.15
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028474
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038068
192498818 - 192505230
6413