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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192711227_192733416_R

Intron Information:

Intron Rank:
129704
Intron Class:
major
Intron Phase:
Intron Coordinates:
192711227 - 192733416
Intron Length:
22190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTTCTATTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
89.7
0.89
0.7
84.3
29.4
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
55.4
0.16
1.9
73.94
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016960
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041995
192707425 - 192733513
26089