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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192766157_192766864_F

Intron Information:

Intron Rank:
143228
Intron Class:
major
Intron Phase:
Intron Coordinates:
192766157 - 192766864
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.9
0.69
0.9
77.9
40.4
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
73.4
0.81
1.5
90.39
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038805
192766060 - 192767828
1769