About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192809797_192812490_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192809797 - 192812490
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCTTCTCTAATT
Flanking Amino Acid:
IRGTVYPVVYVDDSAILDCQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.5
41.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.6
0.78
0.7
80.2
25.4
Minor 5ss
35.3
-1.7
2.7
39.4
40.3
Minor BPS
61.8
0.45
1.7
75.83
41.7

Associated Gene:

Gene:
SPRYD7
Ensembl Gene ID:
ENSAPLG00000007617
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007917
192804188 - 192812676
8489