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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192849362_192861246_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192849362 - 192861246
Intron Length:
11885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TATTCCTTTATA
Flanking Amino Acid:
RNEVTVELRKNKRDEHLLKK
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
82.4
0.73
0.7
77.1
31.3
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
73.5
0.73
1.5
80.47
35.5

Associated Gene:

Gene:
KPNA3
Ensembl Gene ID:
ENSAPLG00000007820
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008172
192831814 - 192880366
48553