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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192861583_192861669_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192861583 - 192861669
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
QNVTLEAILQNATSDNPVIQ
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
KPNA3
Ensembl Gene ID:
ENSAPLG00000007820
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008172
192831814 - 192880366
48553
ENSAPLT00000008141
192857467 - 192880366
22900