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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192868004_192869157_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192868004 - 192869157
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTCTACT
Flanking Amino Acid:
PPPPMETVQEILPALCVLIY
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.7
0.69
0.8
77.4
35.9
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
53.7
0.2
2
81.48
39.8

Associated Gene:

Gene:
KPNA3
Ensembl Gene ID:
ENSAPLG00000007820
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008172
192831814 - 192880366
48553
ENSAPLT00000008141
192857467 - 192880366
22900