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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192872365_192873542_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192872365 - 192873542
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGGATATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCCTTCCCACTT
Flanking Amino Acid:
LLSHQEVKVQTAALRAVGNI
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74.2
0.55
1
70.8
43.7
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
43
-0.4
2
59.67
44.5

Associated Gene:

Gene:
KPNA3
Ensembl Gene ID:
ENSAPLG00000007820
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008172
192831814 - 192880366
48553
ENSAPLT00000008141
192857467 - 192880366
22900