About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192903877_192904383_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192903877 - 192904383
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTCACTTGAAAT
Flanking Amino Acid:
EAIYVTHNDEVFVFGLNCSN
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
57.9
0.33
1.6
74.94
41.5

Associated Gene:

Gene:
RCBTB1
Ensembl Gene ID:
ENSAPLG00000008303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034204
192898318 - 192921477
23160
ENSAPLT00000021380
192898281 - 192921365
23085
ENSAPLT00000018346
192898318 - 192921146
22829
ENSAPLT00000043397
192899757 - 192921365
21609
ENSAPLT00000008681
192902945 - 192921365
18421
ENSAPLT00000042617
192898487 - 192921365
22879