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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192904535_192905012_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192904535 - 192905012
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCCAAACT
Flanking Amino Acid:
SGPHVLLCTEDGEVYAWGHN
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
63.2
0.49
2
85.86
39.9

Associated Gene:

Gene:
RCBTB1
Ensembl Gene ID:
ENSAPLG00000008303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021380
192898281 - 192921365
23085
ENSAPLT00000018346
192898318 - 192921146
22829
ENSAPLT00000043397
192899757 - 192921365
21609
ENSAPLT00000008681
192902945 - 192921365
18421
ENSAPLT00000042617
192898487 - 192921365
22879
ENSAPLT00000034204
192898318 - 192921477
23160