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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192909429_192910357_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192909429 - 192910357
Intron Length:
929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTTACT
Flanking Amino Acid:
AALHGVCILQIVCGYAHTLA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
80.5
0.69
0.9
73.4
35.8
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
58
0.33
2
79.68
41.4

Associated Gene:

Gene:
RCBTB1
Ensembl Gene ID:
ENSAPLG00000008303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021380
192898281 - 192921365
23085
ENSAPLT00000018346
192898318 - 192921146
22829
ENSAPLT00000043397
192899757 - 192921365
21609
ENSAPLT00000008681
192902945 - 192921365
18421
ENSAPLT00000042617
192898487 - 192921365
22879
ENSAPLT00000034204
192898318 - 192921477
23160