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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192912763_192915809_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192912763 - 192915809
Intron Length:
3047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTTTGTTTAAAA
Flanking Amino Acid:
PAVMWRLLSVEQEDYLTVAE
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
61
0.34
1.9
73.23
38.5

Associated Gene:

Gene:
RCBTB1
Ensembl Gene ID:
ENSAPLG00000008303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021380
192898281 - 192921365
23085
ENSAPLT00000018346
192898318 - 192921146
22829
ENSAPLT00000043397
192899757 - 192921365
21609
ENSAPLT00000008681
192902945 - 192921365
18421
ENSAPLT00000042617
192898487 - 192921365
22879
ENSAPLT00000034204
192898318 - 192921477
23160