About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192915937_192916400_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
192915937 - 192916400
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGTC
5'SS Class:
major
3'SS Sequence:
CTCTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TGTTCCTGATGA
Flanking Amino Acid:
IHVHKAVLKIRCEHFRTMFQ
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
67.8
37.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.8
0.51
0.8
65.1
36.3
Minor 5ss
31.7
-2.1
4
48.7
47.8
Minor BPS
52
0.06
2
69.18
42.8

Associated Gene:

Gene:
RCBTB1
Ensembl Gene ID:
ENSAPLG00000008303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008681
192902945 - 192921365
18421
ENSAPLT00000042617
192898487 - 192921365
22879
ENSAPLT00000034204
192898318 - 192921477
23160
ENSAPLT00000021380
192898281 - 192921365
23085
ENSAPLT00000018346
192898318 - 192921146
22829
ENSAPLT00000043397
192899757 - 192921365
21609