Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192920553_192921000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

192920553 - 192921000

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTTAC

5'SS Class:

major

3'SS Sequence:

TCTTTTATTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ATATCTTTTATT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

71.7

34.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

89.5

0.89

0.7

85.1

27.9

Minor 5ss

43.4

-0.7

2.8

62.5

42.2

Minor BPS

64.9

0.55

1.6

78.82

37.8

Associated Gene:

Gene:

RCBTB1

Ensembl Gene ID:

ENSAPLG00000008303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042617

192898487 - 192921365

22879

ENSAPLT00000021380

192898281 - 192921365

23085

ENSAPLT00000018346

192898318 - 192921146

22829

ENSAPLT00000008681

192902945 - 192921365

18421

ENSAPLT00000043397

192899757 - 192921365

21609