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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192925880_192926843_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192925880 - 192926843
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGACCG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAA
U12 Branch Point Sequence:
TCTGTTTTACCA
Flanking Amino Acid:
ILKRKNSRHKVRIDFLRKCK
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
56
43.1
Major BPS
47.8
-0.1
1.3
44.4
40.4
Major PPT
79.7
0.67
0.9
73.7
40.6
Minor 5ss
25.4
-2.8
3.1
30.4
42.9
Minor BPS
54.7
0.14
1.7
65.59
41.9

Associated Gene:

Gene:
PHF11
Ensembl Gene ID:
ENSAPLG00000008888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009249
192921928 - 192937603
15676