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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192931978_192933789_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192931978 - 192933789
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CGTTTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGCCTGCTAACC
Flanking Amino Acid:
LNELKRGKRLVCNFCRKKGA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
62.2
43.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
78.9
0.65
0.8
74.1
35.3
Minor 5ss
30.2
-2.3
3.2
35.3
42.3
Minor BPS
44.2
-0.4
2.3
56.77
41.6

Associated Gene:

Gene:
PHF11
Ensembl Gene ID:
ENSAPLG00000008888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009249
192921928 - 192937603
15676