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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192933898_192935379_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192933898 - 192935379
Intron Length:
1482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATCCTTAACG
Flanking Amino Acid:
QNIAAHRDCLLFSSGFVESE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
82.2
0.87
1.2
78.04
38.2

Associated Gene:

Gene:
PHF11
Ensembl Gene ID:
ENSAPLG00000008888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009249
192921928 - 192937603
15676