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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192936930_192937468_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
192936930 - 192937468
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGACC
5'SS Class:
major
3'SS Sequence:
TCTTATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTACTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
62.1
41.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.8
0.65
0.8
72.8
31.8
Minor 5ss
38
-1.4
3.3
52.9
44
Minor BPS
65.3
0.46
1.6
73.1
38.8

Associated Gene:

Gene:
PHF11
Ensembl Gene ID:
ENSAPLG00000008888
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009249
192921928 - 192937603
15676