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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192948319_192948717_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192948319 - 192948717
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACACTTTTAAAA
Flanking Amino Acid:
TRGRLFVLTQAD**AELKLK
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
52.8
0.08
1.3
56.83
36

Associated Gene:

Gene:
SETDB2
Ensembl Gene ID:
ENSAPLG00000009061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009424
192941130 - 192957648
16519