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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192949762_192951390_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
192949762 - 192951390
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTACTTCTATC
Flanking Amino Acid:
RVTAQMAALIGQNARAYS*L
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
81.1
0.7
0.8
73.7
36.6
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
49.7
-0
1.9
67.39
38.4

Associated Gene:

Gene:
SETDB2
Ensembl Gene ID:
ENSAPLG00000009061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009424
192941130 - 192957648
16519