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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192952757_192953120_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192952757 - 192953120
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CATGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TCTGCTTGTATT
Flanking Amino Acid:
I*GIF*LRQVKAKQLMEMVH
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
79.2
0.72
1
75
40
Major PPT
83.3
0.75
0.8
80.5
36.7
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
48.2
-0
1.9
67.79
43.6

Associated Gene:

Gene:
SETDB2
Ensembl Gene ID:
ENSAPLG00000009061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009424
192941130 - 192957648
16519