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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192953187_192954501_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192953187 - 192954501
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTACATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
RSRTELPQTKNAGRLGHW*T
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
68.9
35.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83
0.74
0.8
80.9
30.1
Minor 5ss
36.2
-1.6
2.7
43.5
43.8
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
SETDB2
Ensembl Gene ID:
ENSAPLG00000009061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009424
192941130 - 192957648
16519