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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_192954625_192956961_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
192954625 - 192956961
Intron Length:
2337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTAA
5'SS Class:
major
3'SS Sequence:
ATTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAACTTGTAAAT
Flanking Amino Acid:
IPVPGKRQMKVM*RHFGPSW
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
64.7
37.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.9
0.72
0.9
78.6
39.1
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
44.5
-0.3
2
58.83
37.8

Associated Gene:

Gene:
SETDB2
Ensembl Gene ID:
ENSAPLG00000009061
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009424
192941130 - 192957648
16519