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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_193029247_193029791_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
193029247 - 193029791
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGT
5'SS Class:
major
3'SS Sequence:
TGCCTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATTCTGAAAT
Flanking Amino Acid:
IHAEQNALTFRCREIKPDEK
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
67.8
43.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.8
0.63
0.8
72.9
31.9
Minor 5ss
36.5
-1.5
3.7
55.9
48.3
Minor BPS
57.7
0.32
1.5
71.01
38.9

Associated Gene:

Gene:
CDADC1
Ensembl Gene ID:
ENSAPLG00000009321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009718
193028329 - 193037436
9108